I am very excited that our preprint 'Reusable rule-based cell cycle model explains compartment-resolved dynamics of 16 observables in RPE-1 cells' is now available on bioRxiv SysBio . Many thanks to the co-authors David Penas, jrbanga , Daniel Weindl and Bela Novak.

A continuous dynamic genome-scale model explains batch fermentations led by species of the Saccharomyces genus. biorxiv.org/cgi/content/sh… #biorxiv_sysbio

Untargeted Plasma Metabolomics Unveils Distinct Metabolite Profiles in Parkinson Disease Subtypes: A Focus on idiopathic REM Sleep ... biorxiv.org/cgi/content/sh… #biorxiv_sysbio

Co-occurring Mutations in Different Genes Can Fuel Oncogenic Signaling and Serve as Metastatic Tumor Markers biorxiv.org/cgi/content/sh… #biorxiv_sysbio

Quantitative cancer-immunity cycle modeling for predicting disease progression in advanced metastatic colorectal cancer biorxiv.org/cgi/content/sh… #biorxiv_sysbio

Large Language Models for Pathway Curation: A Preliminary Investigation biorxiv.org/cgi/content/sh… #biorxiv_sysbio

The Ithildin library for efficient numerical solution of anisotropic reaction-diffusion problems in excitable media biorxiv.org/cgi/content/sh… #biorxiv_sysbio

Our preprint is now online bioRxiv bioRxiv SysBio .The features obtained by tensor decomposition were reflected in the parameters of the biochemical model.

Analysis of Amblyomma americanum microRNAs in response to Ehrlichia chaffeensis infection and their potential role in vectorial capacity biorxiv.org/cgi/content/sh… #biorxiv_sysbio

Signal integration and integral feedback control with biochemical reaction networks biorxiv.org/cgi/content/sh… #biorxiv_sysbio

Single Cell Profiling Distinguishes Leukemia-Selective Chemotypes biorxiv.org/cgi/content/sh… #biorxiv_sysbio

Transplantation of exogenous mitochondria mitigates myocardial dysfunction after cardiac arrest biorxiv.org/cgi/content/sh… #biorxiv_sysbio

Velociraptor: Cross-Platform Quantitative Search Using Hallmark Cell Features biorxiv.org/cgi/content/sh… #biorxiv_sysbio

Sliding Window INteraction Grammar (SWING): a generalized interaction language model for peptide and protein interactions biorxiv.org/cgi/content/sh… #biorxiv_sysbio

Investigating intestinal epithelium metabolic dysfunction in Celiac Disease using personalized genome scale models biorxiv.org/cgi/content/sh… #biorxiv_sysbio

Paul Lang SynBio CDT bioRxiv SysBio jrbanga Daniel Weindl Congrats, Paul :)

Graph convolutional network learning model based on new integrated data of the protein-protein interaction network and network ... biorxiv.org/cgi/content/sh… #biorxiv_sysbio

Gait signature changes with walking speed are similar among able-bodied young adults despite persistent individual-specific differences biorxiv.org/cgi/content/sh… #biorxiv_sysbio

Identification of high sugar diet-induced dysregulated metabolic pathways in muscle using tissue-specific metabolic models in Drosophila biorxiv.org/cgi/content/sh… #biorxiv_sysbio

Solutions of ferrous salts protect liposomes from UV damage: implications for Life Origin biorxiv.org/cgi/content/sh… #biorxiv_sysbio