Bu kamplar sağlam temellerle #Biyoinformatik öğrenmek ve kariyerinde fark yaratmak isteyenler için tasarlandı. Başlangıçtan #algoritmalar gibi temel konulara, R ile #scRNAseq analizi, #protein #modelleme gibi daha konulara kadar kapsamlı ve yoğun bir kamp programı sizi bekliyor.

Blackthorne: UMAP causes massive distortion of equidistant cells and cell types. Neighbors and biologically meaningful metrics aren't preserved. Actually, distortions are even worse than the lower bounds from theory.

Mariko: the Anjin is upset about his scRNAseq skill issue

“We developed TopicVelo to infer cell-state transitions from #scRNAseq data. It’s hard to do that from this kind of data because scRNA-seq is destructive. When you measure the cell this way, you destroy the cell.” - The University of Chicago rna-seqblog.com/getting-dynami…

Unlike traditional #clusteringalgorithms , scTPC harnesses the power of #deeplearning and integrates prior biological knowledge to navigate the complexities of #scRNAseq data. - Shenzhen University rna-seqblog.com/sctpc-a-novel-…

A flow cytometry-based in vitro functional assay for functional screening of T-cell receptor (TCR) clonotypes, identified through single-cell RNA sequencing (scRNAseq): bio-protocol.org/en/bpdetail?id….

#research #immunology

Meet scLENS: our cutting-edge tool for scRNA-seq data. It tackles noise and high dimensionality with L2 normalization and random matrix theory, outperforming 11 other tools. No manual tuning needed! Data-driven signal selection! #scRNAseq #Bioinformatics

nature.com/articles/s4146…

ScRNAseq analysis revealed the characteristics of CD4+ T cells in ACS, which could be therapeutic targets of ACS.
Takuo Emoto
ahajournals.org/doi/10.1161/AT…

LiMCA: Hi-C gets an RNA twist. #HiC #Multiomic #SingleCell #3Dgenome #scRNAseq Nature Methods #NewsAndViews
nature.com/articles/s4159…

Single-cell RNA sequencing (scRNA-seq) is revolutionizing plant research by offering insights into gene expression at the cellular level. #scRNAseq #PlantResearch #syntheticbiology
Details:spj.science.org/doi/10.34133/b…

Simultaneous single-cell three-dimensional genome and gene expression profiling uncovers dynamic enhancer connectivity underlying olfactory receptor choice. #HiC #Multiomic #SingleCell #3Dgenome #scRNAseq #scATACseq #OlfactoryReceptor Nature Methods nature.com/articles/s4159…

demuxSNP: supervised demultiplexing scRNAseq using cell hashing and SNPs dlvr.it/T6498G

🔬 Want to explore the fascinating world of Single Cell Sequencing (scRNA-Seq)? Look no further! 🌟 Our lab offers this cutting-edge service to unveil the secrets of individual cells. Contact us today to discover how your research can benefit!🧬 #SingleCellSequencing #scRNASeq

Using #scRNAseq and preclinical models in a study funded by #NCICSBC , Guangchun Han, Ansam Sinjab 🇺🇸🇸🇾🇱🇧, Linghua Wang, MD, PhD, Humam Kadara, et al. generated an atlas of epithelial cell states and plasticity in #LungCancer nature nature.com/articles/s4158….

Learning about the possibilities offered by BD Biosciences #Rhapsody system for single-cell applications!
#scRNAseq

Working with single-cell data? You have to take a look at this! 👇
#bioinformatics #scRNAseq #sequencing

Please, have a look at our recent bioRxiv! consider adding a new dimension to your #scRNAseq qc computing the nuclear fraction in each cell, either using the intronic content or Malat1 expression

The Fishell lab fishelllab.hms.harvard.edu Gord Fishell at the Broad Institute Broad Institute is hiring a computational associate. You will work with scRNAseq, scATACseq, spatial transcriptomics and more to learn about interneuron and developmental neurobiology! Please DM me/RT!

demuxSNP: supervised demultiplexing scRNAseq using cell hashing and SNPs biorxiv.org/content/10.110…

scRNAseqやってUMAP、これとこれのクラスターが近そうですんで新しい分類です、みたいなのもったいなくない？って思う。
これで終わりですか！？ってなる、こちらの研究には活かせる(かもしれない)から有難くはあるし意味もあると思うんだけどね

Using scRNAseq, Schlenker and Schwalie et al. analyzed peripheral blood cells and cells infiltrating tumors surgically resected from 22 patients with stage III–IV metastatic melanoma who subsequently received CPI therapy. bit.ly/4d5ZwSV  @roche