Very excited to present my poster about #MS2Rescore and open modification immunopeptidomics searches at #ASMS2023 ! Interested? Come see me at posterboard ThP 375, see ya there!

Hi everyone, I’d like to introduce EpiScan, a high-throughput, genetics-based approach to MHC-I immunopeptidomics. With EpiScan, you can quickly validate single peptide binding or easily screen huge (>500k) peptide libraries of your choosing (1/4)

Weights for the non-enzymatic version of Casanovo v4.x are now available! You can use this to analyze data that was generated using a different protease than trypsin, for immunopeptidomics, ...

Model weights on GitHub under the 'Assets' of release v4.0.0: github.com/Noble-Lab/casa…

We are looking for a Postdoctoral Scientist for the High Throughput Immunopeptidomics Platform at HI-TRON Mainz #HITRON #Immunopeptidomics #HTIP #Jobs

Excited to share our review on PSM rescoring of immunopeptidomics data!
…iencejournals.onlinelibrary.wiley.com/doi/full/10.10…

I am excited to announce that the CaronLab is relocating to Yale University! I'll be recruiting staff and postdocs with experimental and computational expertise in immunopeptidomics. I'm heading to ASMS2023, so see you there! Am Soc for Mass Spec HUPO-HIPP Human Proteome Canadian National Proteomics Network US HUPO

Work in progress Etienne Caron BrukerMassSpec Yale Department of Immunobiology
#proteomics #immunopeptidomics #singlecell #teammasspec #timsTOF #massspectrometry

I am very excited to share the manuscript about our highly efficient immunopeptidomics workflow IMBAS. Combined with AlphaPeptDeep Wen-Feng Zeng we acquire deep immunopeptidomes even from limited sample amounts.
If you have any questions, feel free to reach out!

Our LC mass spectrometer arrived last week: Evosep One coupled with timsTOF Ultra
The Immunopeptidomics Platform is taking shape -here we go!
DKFZ Universitätsmedizin Mainz Universität Mainz TRON Mainz

#MassSpectrometer #Immunopeptidomics #HITRON #HTIP

In science, it is important to always be up to date with the latest research. We therefore meet regularly for our lab meetings (etc.) and discuss our work and the latest findings. DKFZ Universitätsmedizin Mainz Universität Mainz TRON Mainz #HITRON #Immunopeptidomics

Passionate about translational research? Recently finished your #PhD or eager for the next career phase with a #PostDoc position? Explore our positions focused on #immunopeptidomics and #tcells and join our team!
uni-tuebingen.kandidatenportal.eu/Job/3059/Wisse…
uni-tuebingen.kandidatenportal.eu/Job/3058/Wisse…

A new study from my group is now online Cell Reports Methods. A microfluidics-enabled automated workflow of sample preparation for MS-based immunopeptidomics cell.com/cell-reports-m… >>>

New review on computational aspects related to immunopeptidomics

Happy to contribute to this perspective article! Finding consensus among proteomics, immunopeptidomics & ribosome profiling in the field of small ORFs and microproteins is essential. Also excited to discuss this in the HUPO 2023 World Congress in September. See the article below!

How many non-canonical ORFs make protein?

We hope this manuscript can help bridge a gap between genomics (Ribo-seq, RNA-seq) and proteomics (shotgun MS, immunopeptidomics) communities, when it comes to the use and interpretation of Ribo-seq ORFs for MS. Feedback welcome!! 😊

Immunopeptidomics in the Era of Single-Cell Proteomics mdpi.com/2079-7737/12/1…

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#prot eomics #prot -paper

A complete mass spectrometry-based immunopeptidomics pipeline for neoantigen identification and validation researchsquare.com/article/rs-352…

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#prot eomics #prot -preprint

New in immunopeptidomics: IMBAS-MS quantifies 5000+ HLA peptides from 200 μl plasma in 30 mins using IonOpticks' column. Unlock biomarker potential in sHLAs.

Visit bit.ly/IO-Wahle-et-al

Link for a job offer (3-year postdoc) in my team for the BAXERNA project “Immunopeptidomics-based Development of Next-Generation Bacterial mRNA Vaccines” funded by Horizon Europe Framework Programme.
Don't hesitate to share.

euraxess.ec.europa.eu/jobs/165101

Interested in learning more about immunopeptidomics? Join us this summer in Montreal for the 3rd HUPO-HIPP summer school: